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Mass Spectrometry

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No Screenshot mMass (Open Source Mass Spectrometry Tool) 5.2.0
mMass (Open Source Mass Spectrometry Tool) presents open source multi-platform package of tools for precise mass spectrometric data analysis and interpretation. It is written in Python language and released under GNU General Public License, so it's portable to different computer platforms and has a good potential to be easily modified or extended by modules of specific needs.Several modules and tools for protein sequence handling and mass...
Price: USD $0.00;   License: Freeware   File Size: 18257 KB;
Platform: Windows

Data Analysis - Open Source - Bioinformatics - Mass Spectrometry - MMass - Mass Spec - Martin Strohalm - Proteomics
No Screenshot msInspect 2.3 Build 599
msInspect allows you to process and view mass spectrometry (MS1) data in an mzXML file. You can use msInspect's built-in tools to inspect data, identify peptide features, generate peptide arrays using data from multiple runs, and export data to external applications for further analysis and collaboration. msInspect is an open source application written in Java. msInspect is also a platform for rapid development of proteomics applications, so...
Price: USD $0.00;   License: Freeware  
Platform: Windows 3.x, Windows , All

Analyzer - Mass Spectrometry - MsInspect - Mass Spectrometry Analyzer - Mass Spectrometry Viewer - Peptide Array Generator - Peptide Array
No Screenshot OpenChrom 0.5.0
OpenChrom is a handy tool specially designed to help you with chromatography. It is based on the Eclipse Rich Client Platform (RCP). Its focus is to handle mass spectrometry systems (e.g. GC/MS, LC/MS, Py-GC/MS, HPLC-MS) data files natively. OpenChrom is able to import binary and textual chromatographic data files, such as *.D chromatograms from Agilent Technologies or NetCDF.

Price: USD $0.00;   License: Freeware  
Platform: Windows 3.x, Windows , All

Spectrometry - Chromatography - OpenChrom - Mass Spectrometry System - Chromatographic Data File - Chromatography Application - Chromatographic
No Screenshot Xhromatogram for Mac OS 0.10.1
A viewer for chromatography and mass spectrometry data in the AIA standard formats. AIA is the industry standard for chromatography data interchange, and in turn is based on the netCDF data format and libraries. Until now, if you wanted to work with a chromatogram on a Mac, you needed to export the image as PDF and the results as a spreadsheet. If you were not so lucky, it would be inside a presentation, or worse yet a word processing...

Price: USD $0.00;   License: Freeware   File Size: 3584 KB;
Platform: Mac, Linux , 10.4,or,later

Xhromatogram
No Screenshot MZmine 2.9
Mass spectrometry data analysis made easy. MZmine help you with differential analysis of mass spectrometry data.MZmine 2 can read and process both unit mass resolution and exact mass resolution (e.g. FTMS) data in both continuous and centroided modes, including fragmentation (MSn) scans.VisualizationMZmine 2 can visualize your raw data together with peak picking and identification results, which is very useful for evaluating different peak...

Price: USD $0.00;   License: Freeware   File Size: 77844 KB;
Platform: Windows

No Screenshot MSight 3.0.1
MSight is a new vision in Mass Spectrometry Imaging. MSight, created by the Proteome Informatics Group, was specifically developed for the representation of mass spectra along with data from the separation step. The program allows graphical exploration inside huge dataset and gives the scientist access to information that previously was hidden.It provides simple ways to navigate through very large volumes of data, with the capability to...

Price: USD $0.00;   License: Freeware   File Size: 33454 KB;
Platform: Windows

Imaging - Evolution - IT Infrastructure - Population Genetics - Genomics - Proteomics - Structural Bioinformatics - Systems Biology - Phylogeny - Transcriptomics
No Screenshot X2XML 1.3
The X2XML software will read different mass spectrometry data files and create an mzXML file representation of the data (provided the proper vendor program is installed). It is an extension of the ReAdW software to support the following file formats:1. Xcalibur .RAW files2. Agilent .wiff files3. Micromass .DAT files (inside .Raw folders)4. Bruker .acqu files5. Bruker ASCII .ascii files6. PNNL ion-mobility spectrometry (IMS) .imf files7. Bruker...

Price: USD $0.00;   License: Freeware   File Size: 741 KB;
Platform: Windows

No Screenshot ChromA (Chromatogram Alignment) 0.9
Chromatogram Alignment for Chromatography-Mass Spectrometry is a web based tool for the alignment and visualization of data from Chromatography-Mass Spectrometry.Consider the case of a Metabolomics experiment, where you have measured the response of an organism's metabolome under different conditions. Now, you want to compare your data, noting, that some peaks seem to be conserved, while other peaks of known compounds are shifted in retention...

Price: USD $0.00;   License: Freeware   File Size: 4 KB;
Platform: Windows

No Screenshot MassWiz 1.7.0.1
MassWiz is a mass spectrometry search algorithm to help you with your work. Open Source Tandem Mass Spectrometry algorithm integrated with target-decoy based FDR analysis facility. Simple and Easy to use. Check out the wiki site for help and support.MassWiz Features:1. proteomics2. mass spectrometry3. target-decoy search4. FDR calculation5. specificity6. algorithm7. sensitivity

Price: USD $0.00;   License: Freeware   File Size: 9768 KB;
Platform: Windows

Screenshot of iPiG iPiG 4
iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/).iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers.For more details...

Price: USD $0.00;   License: Freeware   File Size: 1517 KB;
Platform: Windows, Mac, Linux

Screenshot of JPhysChem modeling tool JPhysChem modeling tool 1.0
JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.

Price: USD $0.00;   License: Freeware   File Size: 922 KB;
Platform: Windows, Mac, Linux

Screenshot of JRasterCreator JRasterCreator 1.0
JRasterCreator allows you to easily & visually build a raster file for the mass spectrometry instrument Bruker Daltonics MS ultraflex II by clicking on various spots/locations.

Price: USD $0.00;   License: Freeware   File Size: 17 KB;
Platform: Windows, Mac, Linux

No Screenshot Maltcms 1.2.0
Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.

Price: USD $0.00;   License: Freeware   File Size: 34190 KB;
Platform: Windows, Mac, Linux

Screenshot of Manuelito Manuelito 2.0
Manuelito is a Java tool for decrypting posttranslational modification (PTM) patterns of proteins based on MALDI mass spectrometry spectra. It was built for analysing the 'histone code' but it can be applied to any other highly modified protein.

Price: USD $0.00;   License: Freeware   File Size: 1626 KB;
Platform: Windows, Mac, Linux

Screenshot of MS-Spectre: quantitative LC-MS analysis MS-Spectre: quantitative LC-MS analysis 1
Spectre for mass spectrometry. (Quantitiave) analysis of multiple ls-ms(ms) runs, using mzXML import of raw data. (working on mzDATA). Provides filters, alignment- and export tools.

Price: USD $0.00;   License: Freeware   File Size: 3709 KB;
Platform: Windows, Mac, Linux

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